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Microbial ecology in the natural environment can be described using PCR based profiling methods including RFLP (Restriction Fragment Length Polymorphism), AFLP (Amplified Fragment Length Polymorphism), ARDRA (Amplified Ribosomal DNA Restriction Analysis), DGGE (Denaturing Gradient Gel Electrophoresis), TGGE (Temperature Gradient Gel Electrophoresis), ARISA (Automated ribosomal intergenic spacer analysis), Ribosomal Intergenic Spacer Analysis (RISA) and RAPD (Random Amplified Polymorphic DNA) [128], FISH (Fluorescent In situ Hybridization) [129]
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